STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL90185.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
SDL90200.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
       0.799
ExoA
Exodeoxyribonuclease-3.
       0.794
SDL72497.1
Protein of unknown function.
  
     0.774
YfkJ
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.773
SDL05407.1
Acyl-CoA reductase (LuxC).
  
     0.760
SDL71231.1
Hypothetical protein.
  
     0.759
SDL75200.1
Gliding motility-associated protein GldC.
  
     0.750
SDL55247.1
Hypothetical protein.
  
     0.731
SDL80364.1
uroporphyrinogen-III synthase.
 
     0.709
SDL58039.1
Hypothetical protein.
  
     0.705
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.