Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Larp6La ribonucleoprotein domain family, member 6. (492 aa)    
Predicted Functional Partners:
Itsn2
Intersectin 2.
    
 
 0.948
Strap
Serine/threonine kinase receptor associated protein.
    
 
 0.908
Itsn1
Intersectin 1 (SH3 domain protein 1A).
    
 
 0.906
Pex5l
Peroxisomal biogenesis factor 5-like.
      
 0.815
Slc35d3
Solute carrier family 35, member D3.
      
 0.798
Gpr171
G protein-coupled receptor 171.
    
   0.792
Slc30a8
Solute carrier family 30 (zinc transporter), member 8.
      
 0.777
Rnf6
Ring finger protein (C3H2C3 type) 6.
      
 0.735
Mab21l3
Mab-21-like 3.
      
 0.721
Gmnc
Geminin coiled-coil domain containing.
      
 0.714
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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