STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab5bRAB5B, member RAS oncogene family. (215 aa)    
Predicted Functional Partners:
Pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.982
Eea1
Early endosome antigen 1.
    
 0.981
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.975
ENSMSIP00000004860
annotation not available
    
 0.956
Rbsn
Rabenosyn, RAB effector.
   
 0.948
Gapvd1
GTPase activating protein and VPS9 domains 1.
    
 0.935
Rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.923
Gdi1
Guanosine diphosphate (GDP) dissociation inhibitor 1.
   
 0.923
Gdi2
Guanosine diphosphate (GDP) dissociation inhibitor 2.
   
 0.923
Appl2
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
   
 
 0.909
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.