STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmc8Transmembrane channel-like gene family 8. (699 aa)    
Predicted Functional Partners:
Mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.836
Slc30a1
Solute carrier family 30 (zinc transporter), member 1.
      
 0.827
Arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.666
Arid4b
AT rich interactive domain 4B (RBP1-like).
    
 0.666
Wdr90
WD repeat domain 90.
    
 0.658
Glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
    
  0.601
Slf1
SMC5-SMC6 complex localization factor 1.
   
 0.591
Wnt11
Wingless-type MMTV integration site family, member 11.
   
 
 0.583
Cib1
Calcium and integrin binding 1 (calmyrin).
    
 0.580
ENSMSIP00000035691
annotation not available
    
  0.567
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.