STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmc8Transmembrane channel-like gene family 8. (699 aa)    
Predicted Functional Partners:
Syngr2
Synaptogyrin 2.
      
 0.714
Hephl1
Hephaestin-like 1.
    
 0.696
Skiv2l
Superkiller viralicidic activity 2-like (S. cerevisiae).
    
 0.666
Tmc6
Transmembrane channel-like gene family 6.
      
 0.629
Cib1
Calcium and integrin binding 1 (calmyrin).
    
 0.625
Il1a
Interleukin 1 alpha.
    
 0.600
Rgcc
Regulator of cell cycle.
      
 0.590
Kcng4
Potassium voltage-gated channel, subfamily G, member 4.
    
 
 0.584
Bfsp2
Beaded filament structural protein 2, phakinin.
    
 0.580
Slc30a1
Solute carrier family 30 (zinc transporter), member 1.
    
 
 0.569
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.