Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tgfb2Transforming growth factor, beta 2. (442 aa)    
Predicted Functional Partners:
Tgfbr2
Transforming growth factor, beta receptor II.
    
 0.997
Tgfbr1
Transforming growth factor, beta receptor I.
    
 0.992
Tgfb1
Transforming growth factor, beta 1.
    
 0.980
Acvr1b
Activin A receptor, type 1B.
    
 0.968
Acvr1c
Activin A receptor, type IC.
    
 0.963
Dcn
Decorin.
    
 0.935
Tgfbr3
Transforming growth factor, beta receptor III.
    
 0.935
App
Amyloid beta (A4) precursor protein.
   
 0.914
Ltbp1
Latent transforming growth factor beta binding protein 1.
    
 0.913
Tgfbr3l
Transforming growth factor, beta receptor III-like.
    
 0.910
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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