Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cdk5rap1CDK5 regulatory subunit associated protein 1. (588 aa)    
Predicted Functional Partners:
Exosc3
Exosome component 3.
   
 
 0.975
Exosc5
Exosome component 5.
   
   0.954
ENSMSIP00000024967
annotation not available
    
   0.934
Mms19
MMS19 cytosolic iron-sulfur assembly component.
   
 
 0.736
Urod
Uroporphyrinogen decarboxylase.
    
 0.700
Endov
Endonuclease V.
    
 0.700
Ciao1
Cytosolic iron-sulfur protein assembly 1.
    
 
 0.698
Trit1
tRNA isopentenyltransferase 1.
  
  
 0.621
Cdk5
Cyclin-dependent kinase 5.
      
 0.604
Carnmt1
Carnosine N-methyltransferase 1.
    
   0.585
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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