Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
9330159F19RikRIKEN cDNA 9330159F19 gene. (648 aa)    
Predicted Functional Partners:
Phf1
PHD finger protein 1.
    
   0.833
Polr3c
Polymerase (RNA) III (DNA directed) polypeptide C.
    
   0.833
Zfp628
Zinc finger protein 628.
      
 0.607
Phf19
PHD finger protein 19.
    
   0.585
Mtf2
Metal response element binding transcription factor 2.
    
   0.585
Mmachc
Methylmalonic aciduria cblC type, with homocystinuria.
     
 0.583
Gfap
Glial fibrillary acidic protein.
    
   0.582
Kcnc4
Potassium voltage gated channel, Shaw-related subfamily, member 4.
      
 0.575
Soga3
SOGA family member 3.
   
  
 0.546
Ptprk
Protein tyrosine phosphatase, receptor type, K.
      
 0.541
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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