Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rc3h2Ring finger and CCCH-type zinc finger domains 2. (1187 aa)    
Predicted Functional Partners:
Rc3h1
RING CCCH (C3H) domains 1.
   
   0.956
Klhl6
Kelch-like 6.
   
 
 0.947
Helz
Helicase with zinc finger domain.
   
 
 0.926
Cnot2
CCR4-NOT transcription complex, subunit 2.
    
 
 0.909
Cnot1
CCR4-NOT transcription complex, subunit 1.
   
 
 0.900
Pfdn4
Prefoldin 4.
    
   0.898
Cnot7
CCR4-NOT transcription complex, subunit 7.
    
 
 0.883
Atxn2
Ataxin 2.
    
 
 0.876
Mov10
Mov10 RISC complex RNA helicase.
    
 
 0.858
Cnot3
CCR4-NOT transcription complex, subunit 3.
    
 
 0.857
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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