Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tmem39bTransmembrane protein 39b. (492 aa)    
Predicted Functional Partners:
Fam118a
Family with sequence similarity 118, member A.
      
 0.579
ENSMSIP00000008172
annotation not available
      
 0.528
Pld6
Phospholipase D family, member 6.
      
 0.526
Dnajc18
DnaJ heat shock protein family (Hsp40) member C18.
      
 0.493
Rhbdd3
Rhomboid domain containing 3.
      
 0.493
Letm2
Leucine zipper-EF-hand containing transmembrane protein 2.
      
 0.492
Sec63
SEC63-like (S. cerevisiae).
      
 0.491
Pla2r1
Phospholipase A2 receptor 1.
      
 0.468
Paqr3
Progestin and adipoQ receptor family member III.
      
 0.466
Hgh1
HGH1 homolog.
      
 0.404
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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