Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Soga3SOGA family member 3. (976 aa)    
Predicted Functional Partners:
Agxt2
Alanine-glyoxylate aminotransferase 2.
     
  0.745
Cat
Catalase.
     
  0.745
Grhpr
Glyoxylate reductase/hydroxypyruvate reductase.
     
  0.745
Ccdc177
Coiled-coil domain containing 177.
      
 0.668
ENSMSIP00000006712
annotation not available
     
  0.653
Pdxp
Pyridoxal (pyridoxine, vitamin B6) phosphatase.
     
  0.653
2310057J18Rik
RIKEN cDNA 2310057J18 gene.
      
 0.593
Trip13
Thyroid hormone receptor interactor 13.
      
 0.561
9330159F19Rik
RIKEN cDNA 9330159F19 gene.
   
  
 0.546
Rbm33
RNA binding motif protein 33.
      
 0.541
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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