Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rnf128Ring finger protein 128. (428 aa)    
Predicted Functional Partners:
Otub1
OTU domain, ubiquitin aldehyde binding 1.
    
 0.958
S100z
S100 calcium binding protein, zeta.
      
 0.887
ENSMSIP00000033974
annotation not available
    
 
 0.883
Tbk1
TANK-binding kinase 1.
    
 
 0.817
Usp8
Ubiquitin specific peptidase 8.
    
 0.812
Otub2
OTU domain, ubiquitin aldehyde binding 2.
    
 0.783
ENSMSIP00000005017
annotation not available
    
   0.729
ENSMSIP00000031034
annotation not available
    
   0.729
Kcnv2
Potassium channel, subfamily V, member 2.
    
 
 0.680
Adcyap1
Adenylate cyclase activating polypeptide 1.
      
 0.641
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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