Pdcl protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Pdcl

Phosducin-like. (301 aa)

Predicted Functional Partners:

Gnb2

0.990

Gnb3

0.985

Gnb5

0.985

Cct3

0.980

Cct2

0.977

ENSMSIP00000024430

0.973

ENSMSIP00000028992

0.973

Gnb1

0.972

Gnb4

0.972

ENSMSIP00000000444

0.968

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cct2	Cct3	ENSMSIP00000010591	ENSMSIP00000035234	Chaperonin containing Tcp1, subunit 2 (beta).	Chaperonin containing Tcp1, subunit 3 (gamma).	0.999
Cct2	ENSMSIP00000000444	ENSMSIP00000010591	ENSMSIP00000000444	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.997
Cct2	ENSMSIP00000024430	ENSMSIP00000010591	ENSMSIP00000024430	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.999
Cct2	ENSMSIP00000028992	ENSMSIP00000010591	ENSMSIP00000028992	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.999
Cct2	Gnb1	ENSMSIP00000010591	ENSMSIP00000016860	Chaperonin containing Tcp1, subunit 2 (beta).	Guanine nucleotide binding protein (G protein), beta 1.	0.775
Cct2	Gnb2	ENSMSIP00000010591	ENSMSIP00000009524	Chaperonin containing Tcp1, subunit 2 (beta).	Guanine nucleotide binding protein (G protein), beta 2.	0.775
Cct2	Gnb3	ENSMSIP00000010591	ENSMSIP00000025245	Chaperonin containing Tcp1, subunit 2 (beta).	Guanine nucleotide binding protein (G protein), beta 3.	0.784
Cct2	Gnb4	ENSMSIP00000010591	ENSMSIP00000037995	Chaperonin containing Tcp1, subunit 2 (beta).	Guanine nucleotide binding protein (G protein), beta 4.	0.775
Cct2	Gnb5	ENSMSIP00000010591	ENSMSIP00000035725	Chaperonin containing Tcp1, subunit 2 (beta).	Guanine nucleotide binding protein (G protein), beta 5.	0.959
Cct2	Pdcl	ENSMSIP00000010591	ENSMSIP00000001191	Chaperonin containing Tcp1, subunit 2 (beta).	Phosducin-like.	0.977
Cct3	Cct2	ENSMSIP00000035234	ENSMSIP00000010591	Chaperonin containing Tcp1, subunit 3 (gamma).	Chaperonin containing Tcp1, subunit 2 (beta).	0.999
Cct3	ENSMSIP00000000444	ENSMSIP00000035234	ENSMSIP00000000444	Chaperonin containing Tcp1, subunit 3 (gamma).	annotation not available	0.997
Cct3	ENSMSIP00000024430	ENSMSIP00000035234	ENSMSIP00000024430	Chaperonin containing Tcp1, subunit 3 (gamma).	annotation not available	0.999
Cct3	ENSMSIP00000028992	ENSMSIP00000035234	ENSMSIP00000028992	Chaperonin containing Tcp1, subunit 3 (gamma).	annotation not available	0.999
Cct3	Gnb1	ENSMSIP00000035234	ENSMSIP00000016860	Chaperonin containing Tcp1, subunit 3 (gamma).	Guanine nucleotide binding protein (G protein), beta 1.	0.717
Cct3	Gnb2	ENSMSIP00000035234	ENSMSIP00000009524	Chaperonin containing Tcp1, subunit 3 (gamma).	Guanine nucleotide binding protein (G protein), beta 2.	0.706
Cct3	Gnb3	ENSMSIP00000035234	ENSMSIP00000025245	Chaperonin containing Tcp1, subunit 3 (gamma).	Guanine nucleotide binding protein (G protein), beta 3.	0.701
Cct3	Gnb4	ENSMSIP00000035234	ENSMSIP00000037995	Chaperonin containing Tcp1, subunit 3 (gamma).	Guanine nucleotide binding protein (G protein), beta 4.	0.713
Cct3	Gnb5	ENSMSIP00000035234	ENSMSIP00000035725	Chaperonin containing Tcp1, subunit 3 (gamma).	Guanine nucleotide binding protein (G protein), beta 5.	0.919
Cct3	Pdcl	ENSMSIP00000035234	ENSMSIP00000001191	Chaperonin containing Tcp1, subunit 3 (gamma).	Phosducin-like.	0.980