Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rhox12Reproductive homeobox 12. (186 aa)    
Predicted Functional Partners:
Nme8
NME/NM23 family member 8.
    
   0.665
Wdr90
WD repeat domain 90.
    
   0.664
Dnajb1
DnaJ heat shock protein family (Hsp40) member B1.
    
 
 0.540
Dnajb13
DnaJ heat shock protein family (Hsp40) member B13.
    
 
 0.540
ENSMSIP00000016953
annotation not available
      
 0.531
Kdm6a
Lysine (K)-specific demethylase 6A.
    
 
 0.495
Ldb1
LIM domain binding 1.
    
 0.480
Ldb2
LIM domain binding 2.
    
 0.480
Srf
Serum response factor.
    
 0.475
Nanos2
Nanos C2HC-type zinc finger 2.
      
 0.471
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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