STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GzmmGranzyme M (lymphocyte met-ase 1). (264 aa)    
Predicted Functional Partners:
Gzmk
Granzyme K.
   
 
 0.956
Cfd
Complement factor D (adipsin).
   
 
 0.894
Prf1
Perforin 1 (pore forming protein).
   
 0.832
Casp3
Caspase 3.
    
 0.761
Parp1
Poly (ADP-ribose) polymerase family, member 1.
   
  0.711
Dffa
DNA fragmentation factor, alpha subunit.
    
  0.707
F2rl3
Coagulation factor II (thrombin) receptor-like 3.
    
 0.698
F2r
Coagulation factor II (thrombin) receptor.
    
  0.687
Agt
Angiotensinogen (serpin peptidase inhibitor, clade A, member 8).
    
 0.686
ENSMSIP00000037437
annotation not available
    
 0.683
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.