Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ift122Intraflagellar transport 122. (1241 aa)    
Predicted Functional Partners:
Wdr35
WD repeat domain 35.
   
0.999
Wdr19
WD repeat domain 19.
   
0.999
Ift140
Intraflagellar transport 140.
   
 0.999
Ift43
Intraflagellar transport 43.
    
 0.999
Ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.999
Tulp3
Tubby-like protein 3.
    
 0.990
Ttc21a
Tetratricopeptide repeat domain 21A.
   
 0.985
Ift46
Intraflagellar transport 46.
    
 0.981
Ift172
Intraflagellar transport 172.
   
0.980
Ift80
Intraflagellar transport 80.
   
 0.980
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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