Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Prrt1Proline-rich transmembrane protein 1. (306 aa)    
Predicted Functional Partners:
Cnih2
Cornichon family AMPA receptor auxiliary protein 2.
    
 
 0.922
ENSMSIP00000037583
annotation not available
    
 
 0.910
Cacng8
Calcium channel, voltage-dependent, gamma subunit 8.
  
 
 
 0.891
Cnih3
Cornichon family AMPA receptor auxiliary protein 3.
    
 
 0.851
Gria2
Glutamate receptor, ionotropic, AMPA2 (alpha 2).
    
 
 0.825
Cacng2
Calcium channel, voltage-dependent, gamma subunit 2.
    
 
 0.822
ENSMSIP00000036683
annotation not available
    
   0.796
Gria3
Glutamate receptor, ionotropic, AMPA3 (alpha 3).
    
 
 0.718
Gria4
Glutamate receptor, ionotropic, AMPA4 (alpha 4).
    
 
 0.699
ENSMSIP00000027285
annotation not available
    
 
 0.673
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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