STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc35f5Solute carrier family 35, member F5. (524 aa)    
Predicted Functional Partners:
Utp4
UTP4 small subunit processome component.
   
 
  0.872
Rrp1b
Ribosomal RNA processing 1 homolog B (S. cerevisiae).
   
 
  0.838
Rrp1
Ribosomal RNA processing 1 homolog (S. cerevisiae).
   
 
  0.838
Fastkd3
FAST kinase domains 3.
    
 0.575
Pepd
Peptidase D.
    
 0.575
Xpnpep2
X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound.
    
 0.575
Xpnpep3
X-prolyl aminopeptidase 3, mitochondrial.
    
 0.575
Xpnpep1
X-prolyl aminopeptidase (aminopeptidase P) 1, soluble.
    
 0.575
ENSMSIP00000020716
annotation not available
  
  
 0.549
ENSMSIP00000001471
annotation not available
      
 0.548
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.