STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atxn1Ataxin 1. (791 aa)    
Predicted Functional Partners:
Cic
Capicua transcriptional repressor.
    
 
 0.959
Kat5
K(lysine) acetyltransferase 5.
    
 0.957
Atxn1l
Ataxin 1-like.
    
0.943
Rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.943
Rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.940
Pum1
Pumilio RNA-binding family member 1.
     
 0.938
Pum2
Pumilio RNA-binding family member 2.
     
 0.889
Ncor2
Nuclear receptor co-repressor 2.
    
 
 0.873
Ubqln4
Ubiquilin 4.
    
 
 0.864
Bbx
Bobby sox HMG box containing.
    
 
 0.817
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.