Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Zup1Zinc finger containing ubiquitin peptidase 1. (643 aa)    
Predicted Functional Partners:
ENSMSIP00000020569
annotation not available
    
 
 0.955
Rpa1
Replication protein A1.
    
   0.939
Ubr5
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.925
ENSMSIP00000003263
annotation not available
    
 
 0.921
ENSMSIP00000006919
annotation not available
    
 
 0.906
Usp11
Ubiquitin specific peptidase 11.
    
 
 0.898
Tceal1
Transcription elongation factor A (SII)-like 1.
    
   0.875
Rpa2
Replication protein A2.
    
   0.851
ENSMSIP00000021797
annotation not available
    
 
 0.843
ENSMSIP00000026159
annotation not available
    
 
 0.843
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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