Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSMSIP00000001393annotation not available (400 aa)    
Predicted Functional Partners:
Ttr
Transthyretin.
   
 0.997
Stra6
Stimulated by retinoic acid gene 6.
     
 0.967
Urah
Urate (5-hydroxyiso-) hydrolase.
   
 0.959
ENSMSIP00000024063
annotation not available
    
 
 0.855
ENSMSIP00000017764
annotation not available
   
 
 0.825
Polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
    
   0.764
ENSMSIP00000012961
annotation not available
    
 
 0.743
Gc
Vitamin D binding protein.
   
  
 0.734
Rars
arginyl-tRNA synthetase.
      
 0.732
F2
Coagulation factor II.
   
  
 0.688
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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