Neil3 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

Neil3

Nei like 3 (E. coli). (606 aa)

Predicted Functional Partners:

Neil1

0.982

Neil2

0.875

Dlgap5

0.818

Coasy

0.780

Dcakd

0.780

Mutyh

0.751

Ttk

0.745

ENSMSIP00000007493

0.731

ENSMSIP00000016390

0.731

Kif15

0.719

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Coasy	Dcakd	ENSMSIP00000006473	ENSMSIP00000033168	Coenzyme A synthase.	dephospho-CoA kinase domain containing.	0.926
Coasy	Neil3	ENSMSIP00000006473	ENSMSIP00000001415	Coenzyme A synthase.	Nei like 3 (E. coli).	0.780
Dcakd	Coasy	ENSMSIP00000033168	ENSMSIP00000006473	dephospho-CoA kinase domain containing.	Coenzyme A synthase.	0.926
Dcakd	Neil3	ENSMSIP00000033168	ENSMSIP00000001415	dephospho-CoA kinase domain containing.	Nei like 3 (E. coli).	0.780
Dlgap5	Kif15	ENSMSIP00000020586	ENSMSIP00000026602	DLG associated protein 5.	Kinesin family member 15.	0.951
Dlgap5	Neil3	ENSMSIP00000020586	ENSMSIP00000001415	DLG associated protein 5.	Nei like 3 (E. coli).	0.818
Dlgap5	Ttk	ENSMSIP00000020586	ENSMSIP00000024721	DLG associated protein 5.	Ttk protein kinase.	0.969
ENSMSIP00000007493	Neil1	ENSMSIP00000007493	ENSMSIP00000010026	annotation not available	Nei endonuclease VIII-like 1 (E. coli).	0.653
ENSMSIP00000007493	Neil2	ENSMSIP00000007493	ENSMSIP00000016410	annotation not available	Nei like 2 (E. coli).	0.498
ENSMSIP00000007493	Neil3	ENSMSIP00000007493	ENSMSIP00000001415	annotation not available	Nei like 3 (E. coli).	0.731
ENSMSIP00000016390	Neil1	ENSMSIP00000016390	ENSMSIP00000010026	annotation not available	Nei endonuclease VIII-like 1 (E. coli).	0.653
ENSMSIP00000016390	Neil2	ENSMSIP00000016390	ENSMSIP00000016410	annotation not available	Nei like 2 (E. coli).	0.498
ENSMSIP00000016390	Neil3	ENSMSIP00000016390	ENSMSIP00000001415	annotation not available	Nei like 3 (E. coli).	0.731
Kif15	Dlgap5	ENSMSIP00000026602	ENSMSIP00000020586	Kinesin family member 15.	DLG associated protein 5.	0.951
Kif15	Neil3	ENSMSIP00000026602	ENSMSIP00000001415	Kinesin family member 15.	Nei like 3 (E. coli).	0.719
Kif15	Ttk	ENSMSIP00000026602	ENSMSIP00000024721	Kinesin family member 15.	Ttk protein kinase.	0.950
Mutyh	Neil1	ENSMSIP00000015335	ENSMSIP00000010026	mutY DNA glycosylase.	Nei endonuclease VIII-like 1 (E. coli).	0.590
Mutyh	Neil2	ENSMSIP00000015335	ENSMSIP00000016410	mutY DNA glycosylase.	Nei like 2 (E. coli).	0.707
Mutyh	Neil3	ENSMSIP00000015335	ENSMSIP00000001415	mutY DNA glycosylase.	Nei like 3 (E. coli).	0.751
Neil1	ENSMSIP00000007493	ENSMSIP00000010026	ENSMSIP00000007493	Nei endonuclease VIII-like 1 (E. coli).	annotation not available	0.653