Prss56 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Prss56

Protease, serine 56. (604 aa)

Predicted Functional Partners:

Tmem98

0.765

Maip1

0.592

Mfrp

0.589

Nepro

0.586

Wdr90

0.586

Ppp1r32

0.581

Arhgap42

0.578

Stox2

0.577

Ctdp1

0.572

Wdr26

0.572

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arhgap42	Maip1	ENSMSIP00000027591	ENSMSIP00000014955	Rho GTPase activating protein 42.	Matrix AAA peptidase interacting protein 1.	0.594
Arhgap42	Nepro	ENSMSIP00000027591	ENSMSIP00000003554	Rho GTPase activating protein 42.	Nucleolus and neural progenitor protein.	0.597
Arhgap42	Prss56	ENSMSIP00000027591	ENSMSIP00000001508	Rho GTPase activating protein 42.	Protease, serine 56.	0.578
Arhgap42	Stox2	ENSMSIP00000027591	ENSMSIP00000037163	Rho GTPase activating protein 42.	Storkhead box 2.	0.608
Ctdp1	Prss56	ENSMSIP00000002538	ENSMSIP00000001508	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1.	Protease, serine 56.	0.572
Ctdp1	Wdr26	ENSMSIP00000002538	ENSMSIP00000009291	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1.	WD repeat domain 26.	0.572
Maip1	Arhgap42	ENSMSIP00000014955	ENSMSIP00000027591	Matrix AAA peptidase interacting protein 1.	Rho GTPase activating protein 42.	0.594
Maip1	Nepro	ENSMSIP00000014955	ENSMSIP00000003554	Matrix AAA peptidase interacting protein 1.	Nucleolus and neural progenitor protein.	0.640
Maip1	Prss56	ENSMSIP00000014955	ENSMSIP00000001508	Matrix AAA peptidase interacting protein 1.	Protease, serine 56.	0.592
Maip1	Stox2	ENSMSIP00000014955	ENSMSIP00000037163	Matrix AAA peptidase interacting protein 1.	Storkhead box 2.	0.621
Mfrp	Prss56	ENSMSIP00000006563	ENSMSIP00000001508	Membrane frizzled-related protein.	Protease, serine 56.	0.589
Mfrp	Tmem98	ENSMSIP00000006563	ENSMSIP00000008062	Membrane frizzled-related protein.	Transmembrane protein 98.	0.545
Nepro	Arhgap42	ENSMSIP00000003554	ENSMSIP00000027591	Nucleolus and neural progenitor protein.	Rho GTPase activating protein 42.	0.597
Nepro	Maip1	ENSMSIP00000003554	ENSMSIP00000014955	Nucleolus and neural progenitor protein.	Matrix AAA peptidase interacting protein 1.	0.640
Nepro	Prss56	ENSMSIP00000003554	ENSMSIP00000001508	Nucleolus and neural progenitor protein.	Protease, serine 56.	0.586
Nepro	Stox2	ENSMSIP00000003554	ENSMSIP00000037163	Nucleolus and neural progenitor protein.	Storkhead box 2.	0.602
Ppp1r32	Prss56	ENSMSIP00000036598	ENSMSIP00000001508	Protein phosphatase 1, regulatory subunit 32.	Protease, serine 56.	0.581
Ppp1r32	Tmem98	ENSMSIP00000036598	ENSMSIP00000008062	Protein phosphatase 1, regulatory subunit 32.	Transmembrane protein 98.	0.435
Ppp1r32	Wdr90	ENSMSIP00000036598	ENSMSIP00000015468	Protein phosphatase 1, regulatory subunit 32.	WD repeat domain 90.	0.841
Prss56	Arhgap42	ENSMSIP00000001508	ENSMSIP00000027591	Protease, serine 56.	Rho GTPase activating protein 42.	0.578