Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pcdhac2Protocadherin alpha subfamily C, 2. (1006 aa)    
Predicted Functional Partners:
Pcdha9
Protocadherin alpha 9.
   
    0.998
ENSMSIP00000015835
annotation not available
   
    0.998
Pcdha1
Protocadherin alpha 1.
   
    0.998
Pcdha2
Protocadherin alpha 2.
   
    0.998
Pcdha3
Protocadherin alpha 3.
   
    0.998
Pcdha12
Protocadherin alpha 12.
   
    0.706
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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