Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pcdhb1Protocadherin beta 1. (818 aa)    
Predicted Functional Partners:
ENSMSIP00000008679
annotation not available
    
 0.570
Igsf9b
Immunoglobulin superfamily, member 9B.
     
 0.537
ENSMSIP00000004867
annotation not available
      
 0.527
ENSMSIP00000036034
annotation not available
      
 0.488
Olfr730
Olfactory receptor 730.
      
 0.487
Cars
cysteinyl-tRNA synthetase.
      
 0.485
ENSMSIP00000017525
annotation not available
      
 0.483
Cdkl4
Cyclin-dependent kinase-like 4.
      
 0.476
Cdkl1
Cyclin-dependent kinase-like 1 (CDC2-related kinase).
      
 0.476
Wdr17
WD repeat domain 17.
      
 0.466
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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