Pabpc5 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Pabpc5

poly(A) binding protein, cytoplasmic 5. (381 aa)

Predicted Functional Partners:

ENSMSIP00000031431

0.963

Tardbp

0.943

Pabpc1l

0.943

Pabpc4l

0.912

Pabpc2

0.912

Pabpc4

0.912

Pabpc6

0.912

Pabpc1

0.912

ENSMSIP00000037492

0.912

Ncbp1

0.869

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000031431	Ncbp1	ENSMSIP00000031431	ENSMSIP00000024291	annotation not available	Nuclear cap binding protein subunit 1.	0.898
ENSMSIP00000031431	Pabpc1l	ENSMSIP00000031431	ENSMSIP00000034349	annotation not available	poly(A) binding protein, cytoplasmic 1-like.	0.750
ENSMSIP00000031431	Pabpc4l	ENSMSIP00000031431	ENSMSIP00000008714	annotation not available	poly(A) binding protein, cytoplasmic 4-like.	0.636
ENSMSIP00000031431	Pabpc5	ENSMSIP00000031431	ENSMSIP00000001660	annotation not available	poly(A) binding protein, cytoplasmic 5.	0.963
ENSMSIP00000031431	Tardbp	ENSMSIP00000031431	ENSMSIP00000013907	annotation not available	TAR DNA binding protein.	0.799
ENSMSIP00000037492	Ncbp1	ENSMSIP00000037492	ENSMSIP00000024291	annotation not available	Nuclear cap binding protein subunit 1.	0.898
ENSMSIP00000037492	Pabpc1l	ENSMSIP00000037492	ENSMSIP00000034349	annotation not available	poly(A) binding protein, cytoplasmic 1-like.	0.750
ENSMSIP00000037492	Pabpc5	ENSMSIP00000037492	ENSMSIP00000001660	annotation not available	poly(A) binding protein, cytoplasmic 5.	0.912
ENSMSIP00000037492	Tardbp	ENSMSIP00000037492	ENSMSIP00000013907	annotation not available	TAR DNA binding protein.	0.763
Ncbp1	ENSMSIP00000031431	ENSMSIP00000024291	ENSMSIP00000031431	Nuclear cap binding protein subunit 1.	annotation not available	0.898
Ncbp1	ENSMSIP00000037492	ENSMSIP00000024291	ENSMSIP00000037492	Nuclear cap binding protein subunit 1.	annotation not available	0.898
Ncbp1	Pabpc1	ENSMSIP00000024291	ENSMSIP00000018245	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 1.	0.898
Ncbp1	Pabpc1l	ENSMSIP00000024291	ENSMSIP00000034349	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 1-like.	0.898
Ncbp1	Pabpc2	ENSMSIP00000024291	ENSMSIP00000014254	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 2.	0.898
Ncbp1	Pabpc4	ENSMSIP00000024291	ENSMSIP00000015720	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 4.	0.898
Ncbp1	Pabpc4l	ENSMSIP00000024291	ENSMSIP00000008714	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 4-like.	0.898
Ncbp1	Pabpc5	ENSMSIP00000024291	ENSMSIP00000001660	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 5.	0.869
Ncbp1	Pabpc6	ENSMSIP00000024291	ENSMSIP00000016569	Nuclear cap binding protein subunit 1.	poly(A) binding protein, cytoplasmic 6.	0.898
Ncbp1	Tardbp	ENSMSIP00000024291	ENSMSIP00000013907	Nuclear cap binding protein subunit 1.	TAR DNA binding protein.	0.572
Pabpc1	Ncbp1	ENSMSIP00000018245	ENSMSIP00000024291	poly(A) binding protein, cytoplasmic 1.	Nuclear cap binding protein subunit 1.	0.898