Emb protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Emb

Embigin. (330 aa)

Predicted Functional Partners:

Lck

0.998

Hcst

0.998

Slc16a7

0.996

Slc16a1

0.974

ENSMSIP00000023503

0.906

Slc16a3

0.835

ENSMSIP00000026400

0.811

ENSMSIP00000018914

0.798

ENSMSIP00000023966

0.798

Slc16a13

0.796

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000018914	Emb	ENSMSIP00000018914	ENSMSIP00000001663	annotation not available	Embigin.	0.798
ENSMSIP00000023503	Emb	ENSMSIP00000023503	ENSMSIP00000001663	annotation not available	Embigin.	0.906
ENSMSIP00000023966	Emb	ENSMSIP00000023966	ENSMSIP00000001663	annotation not available	Embigin.	0.798
ENSMSIP00000026400	Emb	ENSMSIP00000026400	ENSMSIP00000001663	annotation not available	Embigin.	0.811
ENSMSIP00000026400	Slc16a1	ENSMSIP00000026400	ENSMSIP00000011892	annotation not available	Solute carrier family 16 (monocarboxylic acid transporters), member 1.	0.599
ENSMSIP00000026400	Slc16a3	ENSMSIP00000026400	ENSMSIP00000013820	annotation not available	Solute carrier family 16 (monocarboxylic acid transporters), member 3.	0.623
ENSMSIP00000026400	Slc16a7	ENSMSIP00000026400	ENSMSIP00000028862	annotation not available	Solute carrier family 16 (monocarboxylic acid transporters), member 7.	0.595
Emb	ENSMSIP00000018914	ENSMSIP00000001663	ENSMSIP00000018914	Embigin.	annotation not available	0.798
Emb	ENSMSIP00000023503	ENSMSIP00000001663	ENSMSIP00000023503	Embigin.	annotation not available	0.906
Emb	ENSMSIP00000023966	ENSMSIP00000001663	ENSMSIP00000023966	Embigin.	annotation not available	0.798
Emb	ENSMSIP00000026400	ENSMSIP00000001663	ENSMSIP00000026400	Embigin.	annotation not available	0.811
Emb	Hcst	ENSMSIP00000001663	ENSMSIP00000005362	Embigin.	Hematopoietic cell signal transducer.	0.998
Emb	Lck	ENSMSIP00000001663	ENSMSIP00000001778	Embigin.	Lymphocyte protein tyrosine kinase.	0.998
Emb	Slc16a1	ENSMSIP00000001663	ENSMSIP00000011892	Embigin.	Solute carrier family 16 (monocarboxylic acid transporters), member 1.	0.974
Emb	Slc16a13	ENSMSIP00000001663	ENSMSIP00000023517	Embigin.	Solute carrier family 16 (monocarboxylic acid transporters), member 13.	0.796
Emb	Slc16a3	ENSMSIP00000001663	ENSMSIP00000013820	Embigin.	Solute carrier family 16 (monocarboxylic acid transporters), member 3.	0.835
Emb	Slc16a7	ENSMSIP00000001663	ENSMSIP00000028862	Embigin.	Solute carrier family 16 (monocarboxylic acid transporters), member 7.	0.996
Hcst	Emb	ENSMSIP00000005362	ENSMSIP00000001663	Hematopoietic cell signal transducer.	Embigin.	0.998
Hcst	Lck	ENSMSIP00000005362	ENSMSIP00000001778	Hematopoietic cell signal transducer.	Lymphocyte protein tyrosine kinase.	0.998
Lck	Emb	ENSMSIP00000001778	ENSMSIP00000001663	Lymphocyte protein tyrosine kinase.	Embigin.	0.998