STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zcchc3Zinc finger, CCHC domain containing 3. (400 aa)    
Predicted Functional Partners:
Elavl2
ELAV like RNA binding protein 1.
    
 
 0.939
Paip1
Polyadenylate binding protein-interacting protein 1.
   
   0.933
Fam120a
Family with sequence similarity 120, member A.
    
   0.910
Serbp1
Serpine1 mRNA binding protein 1.
   
 
 0.868
Tfap2d
Transcription factor AP-2, delta.
      
 0.867
Spata4
Spermatogenesis associated 4.
      
 0.854
Agpat5
1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).
      
 0.825
Rc3h2
Ring finger and CCCH-type zinc finger domains 2.
    
   0.796
Rc3h1
RING CCCH (C3H) domains 1.
    
   0.796
ENSMSIP00000033655
annotation not available
    
   0.775
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
Server load: low (16%) [HD]