Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tmcc1Transmembrane and coiled coil domains 1. (649 aa)    
Predicted Functional Partners:
Tmcc3
Transmembrane and coiled coil domains 3.
   
 
 0.793
Hook3
Hook microtubule tethering protein 3.
   
    0.659
Lhfpl4
Lipoma HMGIC fusion partner-like protein 4.
      
 0.658
Mkrn2
Makorin, ring finger protein, 2.
      
 0.627
Vgll4
Vestigial like family member 4.
      
 0.626
Mgp
Matrix Gla protein.
      
 0.618
Cftr
Cystic fibrosis transmembrane conductance regulator.
      
 0.618
Il17re
Interleukin 17 receptor E.
      
 0.618
Atg7
Autophagy related 7.
      
 0.618
Pparg
Peroxisome proliferator activated receptor gamma.
      
 0.618
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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