STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab38RAB38, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
Ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.937
Chm
Choroidermia (RAB escort protein 1).
    
 0.835
Rabggta
Rab geranylgeranyl transferase, a subunit.
    
 0.800
Hps1
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.794
Gak
Cyclin G associated kinase.
    
 
 0.744
Ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.696
Gdi1
Guanosine diphosphate (GDP) dissociation inhibitor 1.
    
 0.682
Hps4
HPS4, biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.671
Gdi2
Guanosine diphosphate (GDP) dissociation inhibitor 2.
    
 0.671
Rabggtb
Rab geranylgeranyl transferase, b subunit.
     
 0.662
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.