STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Vps8VPS8 CORVET complex subunit. (1429 aa)    
Predicted Functional Partners:
Vps11
VPS11, CORVET/HOPS core subunit.
    
 0.998
Vps16
VSP16 CORVET/HOPS core subunit.
   
 0.998
Tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
   
 0.998
Vps18
VPS18 CORVET/HOPS core subunit.
   
 0.998
Vps33a
VPS33A CORVET/HOPS core subunit.
    
 0.997
Vps39
VPS39 HOPS complex subunit.
   
 0.984
Vps33b
Vacuolar protein sorting 33B.
    
 0.977
Vps41
VPS41 HOPS complex subunit.
   
 0.972
Rab5b
RAB5B, member RAS oncogene family.
    
 0.955
Rab5a
RAB5A, member RAS oncogene family.
    
 0.937
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.