STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps8VPS8 CORVET complex subunit. (1429 aa)    
Predicted Functional Partners:
Vps11
VPS11, CORVET/HOPS core subunit.
    
 0.998
Vps16
VSP16 CORVET/HOPS core subunit.
    
 0.998
Vps18
VPS18 CORVET/HOPS core subunit.
    
 0.998
Vps33a
VPS33A CORVET/HOPS core subunit.
    
 0.996
Tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
   
 0.996
Vps39
VPS39 HOPS complex subunit.
   
 0.996
Vps33b
Vacuolar protein sorting 33B.
    
 0.992
Vps41
VPS41 HOPS complex subunit.
   
 0.962
Rab5b
RAB5B, member RAS oncogene family.
    
 
 0.834
ENSMSIP00000005152
annotation not available
    
 
 0.834
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.