STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssrp1Structure specific recognition protein 1. (708 aa)    
Predicted Functional Partners:
Supt16
SPT16, facilitates chromatin remodeling subunit.
   
 0.999
ENSMSIP00000035691
annotation not available
    
 0.998
Leo1
Leo1, Paf1/RNA polymerase II complex component.
    
 0.998
Rtf1
RTF1, Paf1/RNA polymerase II complex component.
   
 0.997
Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
Cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component.
   
 0.996
Supt5
Suppressor of Ty 5, DSIF elongation factor subunit.
   
 0.995
Supt6
SPT6, histone chaperone and transcription elongation factor.
   
 0.995
Paf1
Paf1, RNA polymerase II complex component.
   
 0.994
Supt4a
SPT4A, DSIF elongation factor subunit.
    
 0.994
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.