STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ssrp1Structure specific recognition protein 1. (708 aa)    
Predicted Functional Partners:
Supt16
SPT16, facilitates chromatin remodeling subunit.
   
 0.999
Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.989
Supt6
SPT6, histone chaperone and transcription elongation factor.
   
 0.986
Supt5
Suppressor of Ty 5, DSIF elongation factor subunit.
   
 0.983
ENSMSIP00000035691
annotation not available
   
 0.982
Leo1
Leo1, Paf1/RNA polymerase II complex component.
   
 0.982
Iws1
IWS1, SUPT6 interacting protein.
   
 0.982
Paf1
Paf1, RNA polymerase II complex component.
   
 0.981
Cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component.
   
 0.980
Csnk2a1
Casein kinase 2, alpha 1 polypeptide.
    
 0.976
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.