STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsdc1BSD domain containing 1. (427 aa)    
Predicted Functional Partners:
Ghitm
Growth hormone inducible transmembrane protein.
   
    0.865
Atg13
Autophagy related 13.
   
    0.603
Mdp1
Magnesium-dependent phosphatase 1.
      
 0.522
ENSMSIP00000004205
annotation not available
      
 0.489
Sdc1
Syndecan 1.
      
 0.453
Hpse
Heparanase.
      
 0.434
Polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
      
 0.422
Hsdl2
Hydroxysteroid dehydrogenase like 2.
    
 
 0.419
Tmem97
Transmembrane protein 97.
      
 0.402
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.