Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Wdr53WD repeat domain 53. (358 aa)    
Predicted Functional Partners:
Prpf3
pre-mRNA processing factor 3.
   
 0.955
Prpf31
pre-mRNA processing factor 31.
   
 0.936
Prpf6
pre-mRNA splicing factor 6.
   
 0.901
ENSMSIP00000006658
annotation not available
   
  0.895
Snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 0.889
Prpf8
pre-mRNA processing factor 8.
    
 0.889
Eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.882
Sart1
Squamous cell carcinoma antigen recognized by T cells 1.
   
 0.879
Lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.873
ENSMSIP00000032508
annotation not available
    
 0.834
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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