STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col4a3bpCollagen, type IV, alpha 3 (Goodpasture antigen) binding protein. (751 aa)    
Predicted Functional Partners:
Vapa
Vesicle-associated membrane protein, associated protein A.
    
 0.843
Csnk1g2
Casein kinase 1, gamma 2.
    
 0.825
ENSMSIP00000031659
annotation not available
    
 0.825
ENSMSIP00000031663
annotation not available
    
 0.825
Csnk1g1
Casein kinase 1, gamma 1.
    
 0.770
Rangap1
RAN GTPase activating protein 1.
    
   0.755
Vapb
Vesicle-associated membrane protein, associated protein B and C.
    
 0.718
Pitpnm1
Phosphatidylinositol transfer protein, membrane-associated 1.
    
 
 0.651
Cerk
Ceramide kinase.
    
 
 0.644
Osbpl7
Oxysterol binding protein-like 7.
     
 0.639
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.