Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ptbp1Polypyrimidine tract binding protein 1. (555 aa)    
Predicted Functional Partners:
Hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.975
Hnrnpd
Heterogeneous nuclear ribonucleoprotein D.
   
 0.951
Hnrnpab
Heterogeneous nuclear ribonucleoprotein A/B.
   
 0.941
Elavl1
ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R).
   
 0.941
Pcbp1
poly(rC) binding protein 1.
   
 0.938
Hnrnpa2b1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.937
ENSMSIP00000033894
annotation not available
   
 0.937
ENSMSIP00000012414
annotation not available
   
 0.935
ENSMSIP00000024372
annotation not available
   
 0.935
ENSMSIP00000033569
annotation not available
   
 0.935
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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