Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Clca4bChloride channel accessory 4B. (926 aa)    
Predicted Functional Partners:
Clca2
Chloride channel accessory 2.
     
  0.794
Fam20b
Family with sequence similarity 20, member B.
   
 
  0.712
Lix1l
Lix1-like.
   
  
 0.701
Cwc25
CWC25 spliceosome-associated protein.
   
    0.686
9930104L06Rik
RIKEN cDNA 9930104L06 gene.
   
    0.685
Mocs3
Molybdenum cofactor synthesis 3.
   
   0.683
Calhm4
Calcium homeostasis modulator family member 4.
   
    0.642
Calhm2
Calcium homeostasis modulator family member 2.
   
    0.642
Acot11
acyl-CoA thioesterase 11.
   
    0.634
Acot12
acyl-CoA thioesterase 12.
   
    0.634
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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