STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctdp1CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1. (960 aa)    
Predicted Functional Partners:
Gtf2f1
General transcription factor IIF, polypeptide 1.
   
 0.994
Polr2a
Polymerase (RNA) II (DNA directed) polypeptide A.
    
 0.989
ENSMSIP00000004742
annotation not available
    
 0.987
Polr2g
Polymerase (RNA) II (DNA directed) polypeptide G.
    
 0.986
Polr2b
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.985
Gtf2f2
General transcription factor IIF, polypeptide 2.
    
 0.984
Polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.982
Polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
 0.975
Polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.964
Polr2e
Polymerase (RNA) II (DNA directed) polypeptide E.
   
 0.963
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.