STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arid3aAT rich interactive domain 3A (BRIGHT-like). (601 aa)    
Predicted Functional Partners:
Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
    
 0.957
Pbrm1
Polybromo 1.
   
 0.955
Arid3b
AT rich interactive domain 3B (BRIGHT-like).
  
  
0.799
Med22
Mediator complex subunit 22.
   
 
  0.794
Mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.781
Med7
Mediator complex subunit 7.
    
  0.777
Med17
Mediator complex subunit 17.
    
  0.766
Med14
Mediator complex subunit 14.
   
  0.760
Med10
Mediator complex subunit 10.
   
 
  0.754
Ccnc
Cyclin C.
   
 
  0.752
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.