Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tceal1Transcription elongation factor A (SII)-like 1. (165 aa)    
Predicted Functional Partners:
Usp11
Ubiquitin specific peptidase 11.
    
 
 0.957
Tceal5
Transcription elongation factor A (SII)-like 5.
  
 
 0.914
Tceal3
Transcription elongation factor A (SII)-like 3.
  
 
 0.913
Zup1
Zinc finger containing ubiquitin peptidase 1.
    
   0.875
Phf7
PHD finger protein 7.
    
   0.862
Usp7
Ubiquitin specific peptidase 7.
    
   0.857
Usp19
Ubiquitin specific peptidase 19.
    
 
 0.849
ENSMSIP00000035793
annotation not available
    
   0.826
Kdm3a
Lysine (K)-specific demethylase 3A.
    
   0.820
Tceal7
Transcription elongation factor A (SII)-like 7.
      
 0.774
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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