Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AtripATR interacting protein. (785 aa)    
Predicted Functional Partners:
Atr
Ataxia telangiectasia and Rad3 related.
    
 0.999
Topbp1
Topoisomerase (DNA) II binding protein 1.
    
 0.994
Rpa1
Replication protein A1.
    
 0.992
Brca1
Breast cancer 1, early onset.
    
 0.988
Chek1
Checkpoint kinase 1.
    
 0.983
Rpa2
Replication protein A2.
    
 0.979
Nbn
Nibrin.
    
 0.968
B2m
Beta-2 microglobulin.
    
 0.947
Slf1
SMC5-SMC6 complex localization factor 1.
    
 0.946
Mcm2
Minichromosome maintenance complex component 2.
    
 0.937
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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