Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSMSIP00000003170annotation not available (1018 aa)    
Predicted Functional Partners:
Pcdh20
Protocadherin 20.
    
  0.856
Pcdh1
Protocadherin 1.
     
 0.855
Pcdh7
Protocadherin 7.
     
 0.853
St6gal2
Beta galactoside alpha 2,6 sialyltransferase 2.
   
  
 0.584
Setd4
SET domain containing 4.
      
 0.559
Slc5a7
Solute carrier family 5 (choline transporter), member 7.
      
 0.558
Timd4
T cell immunoglobulin and mucin domain containing 4.
     
 0.549
ENSMSIP00000018284
annotation not available
     
 0.541
Prkx
Protein kinase, X-linked.
   
 
 0.535
Arl13a
ADP-ribosylation factor-like 13A.
      
 0.534
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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