STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam50bFamily with sequence similarity 50, member B. (335 aa)    
Predicted Functional Partners:
Slu7
SLU7 splicing factor homolog (S. cerevisiae).
   
 
  0.718
BC005624
cDNA sequence BC005624.
    
  0.717
Nkapl
NFKB activating protein-like.
   
 
  0.707
Cdc40
Cell division cycle 40.
   
 
  0.677
ENSMSIP00000009551
annotation not available
    
  0.676
Prkrip1
Prkr interacting protein 1 (IL11 inducible).
   
 
  0.673
Upf3a
UPF3 regulator of nonsense transcripts homolog A (yeast).
   
  0.664
ENSMSIP00000008537
annotation not available
   
  0.664
Alyref
Aly/REF export factor.
   
  0.662
Alyref2
Aly/REF export factor 2.
   
  0.662
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.