Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atg12Autophagy related 12. (141 aa)    
Predicted Functional Partners:
Atg3
Autophagy related 3.
    
 0.999
Atg5
Autophagy related 5.
   
 0.999
Atg10
Autophagy related 10.
    
 0.999
Atg7
Autophagy related 7.
    
 0.999
Atg16l1
Autophagy related 16-like 1 (S. cerevisiae).
    
 0.999
Atg16l2
Autophagy related 16-like 2 (S. cerevisiae).
    
 0.993
Map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.984
Mavs
Mitochondrial antiviral signaling protein.
    
 0.983
Ulk1
Unc-51 like kinase 1.
    
 
 0.976
ENSMSIP00000003580
annotation not available
   
 0.975
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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