Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nup98Nucleoporin 98. (1816 aa)    
Predicted Functional Partners:
Nup153
Nucleoporin 153.
   
 0.999
Nup93
Nucleoporin 93.
   
 0.999
Nup133
Nucleoporin 133.
   
 0.999
Nup107
Nucleoporin 107.
   
 0.999
Nup88
Nucleoporin 88.
   
 0.999
Nup43
Nucleoporin 43.
    
 0.999
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.999
Rae1
Ribonucleic acid export 1.
    
 0.999
Nup160
Nucleoporin 160.
   
 0.999
Nup85
Nucleoporin 85.
   
 0.999
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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