STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HnrnpdHeterogeneous nuclear ribonucleoprotein D. (353 aa)    
Predicted Functional Partners:
Syncrip
Synaptotagmin binding, cytoplasmic RNA interacting protein.
   
0.989
Paip1
Polyadenylate binding protein-interacting protein 1.
    
 0.958
Hnrnpu
Heterogeneous nuclear ribonucleoprotein U.
   
 0.953
Csde1
Cold shock domain containing E1, RNA binding.
    
 0.936
ENSMSIP00000010901
annotation not available
    
 
 0.928
ENSMSIP00000011965
annotation not available
  
0.928
ENSMSIP00000017254
annotation not available
  
0.928
Tnpo1
Transportin 1.
    
 
 0.928
ENSMSIP00000006192
annotation not available
  
0.927
Hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
  
0.927
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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