STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam13bFamily with sequence similarity 13, member B. (873 aa)    
Predicted Functional Partners:
Exoc7
Exocyst complex component 7.
     
 0.697
Exoc1
Exocyst complex component 1.
   
 
  0.672
Cdc42
Cell division cycle 42.
    
 0.638
Mettl11b
Methyltransferase like 11B.
      
 0.547
1700066B19Rik
RIKEN cDNA 1700066B19 gene.
      
 0.543
ENSMSIP00000004332
annotation not available
      
 0.532
Rasgef1c
RasGEF domain family, member 1C.
      
 0.527
Rufy1
RUN and FYVE domain containing 1.
      
 0.527
Sh3pxd2a
SH3 and PX domains 2A.
      
 0.525
Pkd2l2
Polycystic kidney disease 2-like 2.
      
 0.493
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.