STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrcol1Leucine rich colipase-like 1. (161 aa)    
Predicted Functional Partners:
4921507P07Rik
RIKEN cDNA 4921507P07 gene.
      
 0.714
Fam229b
Family with sequence similarity 229, member B.
      
 0.622
ENSMSIP00000011068
annotation not available
      
 0.593
Eddm3b
Epididymal protein 3B.
      
 0.593
Myh15
Myosin, heavy chain 15.
      
 0.585
ENSMSIP00000014799
annotation not available
      
 0.573
Cabs1
Calcium binding protein, spermatid specific 1.
      
 0.569
Spata24
Spermatogenesis associated 24.
      
 0.567
Tmem114
Transmembrane protein 114.
      
 0.544
Iqca
IQ motif containing with AAA domain.
      
 0.544
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.