Pfdn4 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

Pfdn4

Prefoldin 4. (134 aa)

Predicted Functional Partners:

Vbp1

0.999

ENSMSIP00000035964

0.998

ENSMSIP00000006821

0.997

Pfdn6

0.997

ENSMSIP00000018908

0.997

ENSMSIP00000028845

0.997

Pfdn5

0.997

Pdrg1

0.988

Cct2

0.931

Tbcd

0.929

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cct2	ENSMSIP00000006821	ENSMSIP00000010591	ENSMSIP00000006821	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.877
Cct2	ENSMSIP00000018908	ENSMSIP00000010591	ENSMSIP00000018908	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.830
Cct2	ENSMSIP00000028845	ENSMSIP00000010591	ENSMSIP00000028845	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.922
Cct2	ENSMSIP00000035964	ENSMSIP00000010591	ENSMSIP00000035964	Chaperonin containing Tcp1, subunit 2 (beta).	annotation not available	0.879
Cct2	Pfdn4	ENSMSIP00000010591	ENSMSIP00000004445	Chaperonin containing Tcp1, subunit 2 (beta).	Prefoldin 4.	0.931
Cct2	Pfdn5	ENSMSIP00000010591	ENSMSIP00000030580	Chaperonin containing Tcp1, subunit 2 (beta).	Prefoldin 5.	0.877
Cct2	Pfdn6	ENSMSIP00000010591	ENSMSIP00000014491	Chaperonin containing Tcp1, subunit 2 (beta).	Prefoldin subunit 6.	0.830
Cct2	Vbp1	ENSMSIP00000010591	ENSMSIP00000018848	Chaperonin containing Tcp1, subunit 2 (beta).	Von Hippel-Lindau binding protein 1.	0.890
ENSMSIP00000006821	Cct2	ENSMSIP00000006821	ENSMSIP00000010591	annotation not available	Chaperonin containing Tcp1, subunit 2 (beta).	0.877
ENSMSIP00000006821	ENSMSIP00000018908	ENSMSIP00000006821	ENSMSIP00000018908	annotation not available	annotation not available	0.996
ENSMSIP00000006821	ENSMSIP00000028845	ENSMSIP00000006821	ENSMSIP00000028845	annotation not available	annotation not available	0.997
ENSMSIP00000006821	ENSMSIP00000035964	ENSMSIP00000006821	ENSMSIP00000035964	annotation not available	annotation not available	0.997
ENSMSIP00000006821	Pdrg1	ENSMSIP00000006821	ENSMSIP00000000904	annotation not available	P53 and DNA damage regulated 1.	0.532
ENSMSIP00000006821	Pfdn4	ENSMSIP00000006821	ENSMSIP00000004445	annotation not available	Prefoldin 4.	0.997
ENSMSIP00000006821	Pfdn5	ENSMSIP00000006821	ENSMSIP00000030580	annotation not available	Prefoldin 5.	0.544
ENSMSIP00000006821	Pfdn6	ENSMSIP00000006821	ENSMSIP00000014491	annotation not available	Prefoldin subunit 6.	0.996
ENSMSIP00000006821	Tbcd	ENSMSIP00000006821	ENSMSIP00000013097	annotation not available	Tubulin-specific chaperone d.	0.806
ENSMSIP00000006821	Vbp1	ENSMSIP00000006821	ENSMSIP00000018848	annotation not available	Von Hippel-Lindau binding protein 1.	0.998
ENSMSIP00000018908	Cct2	ENSMSIP00000018908	ENSMSIP00000010591	annotation not available	Chaperonin containing Tcp1, subunit 2 (beta).	0.830
ENSMSIP00000018908	ENSMSIP00000006821	ENSMSIP00000018908	ENSMSIP00000006821	annotation not available	annotation not available	0.996