STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usf3Upstream transcription factor family member 3. (2222 aa)    
Predicted Functional Partners:
Wdr18
WD repeat domain 18.
   
 0.616
Tex10
Testis expressed gene 10.
    
 0.586
H2-DMa
Histocompatibility 2, class II, locus DMa.
   
  0.535
Pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.528
Rc3h2
Ring finger and CCCH-type zinc finger domains 2.
   
   0.516
Tab3
TGF-beta activated kinase 1/MAP3K7 binding protein 3.
  
    0.486
H2-Ea-ps
Histocompatibility 2, class II antigen E alpha, pseudogene.
   
  0.478
H2-Oa
Histocompatibility 2, O region alpha locus.
   
  0.478
Smg1
SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans).
   
   0.469
H2-Aa
Histocompatibility 2, class II antigen A, alpha.
    
  0.459
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.