STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp11Ubiquitin specific peptidase 11. (921 aa)    
Predicted Functional Partners:
Nfkbia
Nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha.
     
 0.946
Usp7
Ubiquitin specific peptidase 7.
   
 
 0.936
Tceal1
Transcription elongation factor A (SII)-like 1.
   
 
 0.841
Rnf123
Ring finger protein 123.
   
 0.813
Mrps9
Mitochondrial ribosomal protein S9.
   
 
 0.794
Mrpl3
Mitochondrial ribosomal protein L3.
   
 
 0.787
Mrpl11
Mitochondrial ribosomal protein L11.
    
 
 0.786
ENSMSIP00000020569
annotation not available
    
 0.777
ENSMSIP00000022539
annotation not available
    
 0.776
Sart3
Squamous cell carcinoma antigen recognized by T cells 3.
    
 
 0.769
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.